crisprSQL

Epigenetics Studies

We have annotated the cleavage data points with a choice of five epigenetic markers. The respective studies are linked below.
With these studies, we are able to check annotation for 97.1% of our cell-line data with at least two epigenetic markers, 79.7% with at least three epigenetic markers and 28.3% of our data with all five epigenetic markers.

No.	study	assay type	cell line	total matching targets	annotated targets
1	SCREEN ENCODE v4	DNase	embryo	0	0
2	SCREEN ENCODE v4	H3K4me3	embryo	0	0
3	SCREEN ENCODE v4	H3K4me3	HAP1	7	7
4	SCREEN ENCODE v4	CTCF	HEK293	82	82
5	SCREEN ENCODE v4	CTCF	HeLa	20	20
6	SCREEN ENCODE v4	DNase	HeLa	36	34
7	SCREEN ENCODE v4	H3K4me3	HeLa	37	31
8	SCREEN ENCODE v4	CTCF	K562	50	50
9	SCREEN ENCODE v4	DNase	K562	63	63
10	SCREEN ENCODE v4	H3K4me3	K562	28	28
11	GSM2871902	H3K4me3	HAP1	162	1
12	GSE68948	DRIP	HEK293	3254	0
13	GSM683769	RRBS	HEK293	3254	37
14	GSM720354	RRBS	HEK293	3254	44
15	GSM720355	RRBS	HEK293	3254	48
16	GSM2711412	H3K4me3	HEK293	3254	1594
17	GSM2902639	DNase	HEK293	3254	1518
18	ENCFF001TOL	RRBS	K562	1299	14
19	ENCFF001TOM	RRBS	K562	1299	11
20	GSM683780	RRBS	K562	1299	11
21	GSM683825	RRBS	K562	1299	10
22	GSM683856	RRBS	K562	1299	14
23	GSM1720619	DRIP	K562	1299	106
24	GSE87831	DNase	U2OS	5950	93
25	GSE87831	DNase	U2OS	5950	93
26	GSM1296149	CTCF	U2OS	5950	2151
27	GSM1683507	DRIP	U2OS	5950	0
28	GSM3147770	H3K4me3	U2OS	5950	640
29	GSM3196008	DRIP	U2OS	5950	357
30	ENCFF813SKE	DNase	HAP1	162	0
31	ENCFF944IGS	DNase	HAP1	162	0
32	ENCFF018VMV	CTCF	HEK293	3254	190
33	ENCFF127KSH	DNase	HEK293	3254	0
34	ENCFF781HLM	H3K4me3	HEK293	3254	29
35	ENCFF781HLM	H3K4me3	HEK293	3254	29
36	ENCFF148POZ	H3K4me3	K562	1299	0
37	ENCFF251TOG	H3K4me3	K562	1299	0
38	ENCFF500EUY	H3K4me3	K562	1299	0
39	ENCFF616DLO	H3K4me3	K562	1299	0
40	ENCFF718PBW	DNase	K562	1299	0
41	ENCFF843VHC	CTCF	K562	1299	0
42	ENCFF875WSG	DNase	K562	1299	0
43	ENCFF961SPZ	H3K4me3	K562	1299	0
44	ENCFF001YOC	DNase	embryo	426	0
45	ENCFF940SWY	DNase	embryo	426	0
46	ENCFF041TGX	DNase	embryo	426	0
47	ENCFF357JNZ	H3K4me3	embryo	426	0
48	ENCFF940SWY	CTCF	embryo	426	0
49	ENCFF915PWP	CTCF	HeLa	399	0
50	ENCFF474KGT	CTCF	HeLa	399	0
51	ENCFF001TMU	RRBS	HeLa	399	10
52	ENCFF001TMV	RRBS	HeLa	399	7
53	ENCFF351NVF	DNase	HeLa	399	22
54	ENCFF982QSW	H3K4me3	HeLa	399	30
55	ENCFF542GBR	H3K4me3	HeLa	399	31
56	ENCFF201KBA	H3K4me3	HeLa	399	24
57	ENCFF102MXI	H3K4me3	HeLa	399	23
58	GSM2668157	DRIP	HeLa	399	223
59	GSM2452072	DRIP	HeLa	399	363
60	ENCFF331BAX	CTCF	HeLa	399	0
61	ENCFF862FGB	CTCF	HeLa	399	0
62	ENCFF095GJF	DNase	HeLa	399	0
63	ENCFF186BOU	DNase	HeLa	399	0
64	ENCFF879GTR	DNase	HeLa	399	0
65	ENCFF029YMX	H3K4me3	HeLa	399	0
66	ENCFF850XBJ	H3K4me3	HeLa	399	0
67	ENCFF336AJX	H3K4me3	HeLa	399	0
68	ENCFF479ZEP	H3K4me3	HeLa	399	0